miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71720428|gb|DR951065.1|DR951065 CCTAAACTCTCTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAAAATCA
AAACCCCTTTCTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCCCAAAC
ACTCACATCACCATGTCTTCATCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCAATTAA
GGAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGTTGTTG
TTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCGAACAA
TCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCACATCTT
CCTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATCCACAA
TCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAGAAGGT
AAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAATGTAAT
GGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAGCATTG
GAATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATGAATACTGCTGAAGATGCTATTGTCAGATTAACAAGAGAA
ATTGTTCCT




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  412 bits (1059), Expect = e-114
 Identities = 219/288 (76%), Positives = 232/288 (80%), Gaps = 2/288 (0%)
 Frame = +2

Query: 32  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 208
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 209 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 385
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 386 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 565
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 566 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 745
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 746 CGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVP 889
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VP
Sbjct: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVP 285